All modules for which code is available
- builtins
- dae.annotation.annotatable
- dae.annotation.annotate_columns
- dae.annotation.annotate_vcf
- dae.annotation.annotation_factory
- dae.annotation.annotation_pipeline
- dae.annotation.annotator_base
- dae.annotation.context
- dae.annotation.effect_annotator
- dae.annotation.gene_score_annotator
- dae.annotation.liftover_annotator
- dae.annotation.normalize_allele_annotator
- dae.annotation.record_to_annotatable
- dae.annotation.score_annotator
- dae.common_reports.common_report
- dae.common_reports.denovo_report
- dae.common_reports.family_counter
- dae.common_reports.family_report
- dae.common_reports.people_counter
- dae.configuration.gpf_config_parser
- dae.configuration.study_config_builder
- dae.configuration.utils
- dae.effect_annotation.annotation_effects
- dae.effect_annotation.annotation_request
- dae.effect_annotation.annotator
- dae.effect_annotation.cli
- dae.effect_annotation.effect
- dae.effect_annotation.effect_checkers.coding
- dae.effect_annotation.effect_checkers.frame_shift
- dae.effect_annotation.effect_checkers.intron
- dae.effect_annotation.effect_checkers.promoter
- dae.effect_annotation.effect_checkers.protein_change
- dae.effect_annotation.effect_checkers.splice_site
- dae.effect_annotation.effect_checkers.start_loss
- dae.effect_annotation.effect_checkers.stop_loss
- dae.effect_annotation.effect_checkers.utr
- dae.effect_annotation.gene_codes
- dae.effect_annotation.variant
- dae.enrichment_tool.event_counters
- dae.enrichment_tool.genotype_helper
- dae.gene.denovo_gene_set_collection
- dae.gene.denovo_gene_set_collection_factory
- dae.gene.denovo_gene_sets_db
- dae.gene.gene_sets_db
- dae.gene.gene_term
- dae.gene.utils
- dae.genomic_resources
- dae.genomic_resources.aggregators
- dae.genomic_resources.cached_repository
- dae.genomic_resources.cli
- dae.genomic_resources.fsspec_protocol
- dae.genomic_resources.gene_models
- dae.genomic_resources.genomic_context
- dae.genomic_resources.genomic_position_table.line
- dae.genomic_resources.genomic_position_table.table_tabix
- dae.genomic_resources.genomic_position_table.table_vcf
- dae.genomic_resources.genomic_position_table.utils
- dae.genomic_resources.genomic_scores
- dae.genomic_resources.group_repository
- dae.genomic_resources.histogram
- dae.genomic_resources.reference_genome
- dae.genomic_resources.repository
- dae.genomic_resources.repository_factory
- dae.genomic_resources.testing
- dae.genotype_storage
- dae.gpf_instance.gpf_instance
- dae.gpf_instance_plugin.gpf_instance_context_plugin
- dae.import_tools.import_tools
- dae.inmemory_storage.inmemory_genotype_storage
- dae.inmemory_storage.inmemory_import_storage
- dae.inmemory_storage.raw_variants
- dae.parquet.schema2.parquet_io
- dae.parquet.schema2.serializers
- dae.pedigrees.drawing
- dae.pedigrees.family
- dae.pedigrees.family_role_builder
- dae.pedigrees.family_tag_builder
- dae.pedigrees.layout
- dae.pedigrees.loader
- dae.pedigrees.pedigrees
- dae.pedigrees.testing
- dae.person_filters
- dae.person_sets
- dae.pheno.common
- dae.pheno.db
- dae.pheno.graphs
- dae.pheno.prepare.measure_classifier
- dae.pheno.prepare.pheno_prepare
- dae.pheno.prepare_data
- dae.pheno.utils.commons
- dae.pheno.utils.lin_regress
- dae.pheno_tool.tool
- dae.query_variants.attributes_query
- dae.query_variants.attributes_query_inheritance
- dae.query_variants.query_runners
- dae.query_variants.sql.schema2.base_query_builder
- dae.query_variants.sql.schema2.family_builder
- dae.query_variants.sql.schema2.summary_builder
- dae.studies.study
- dae.studies.variants_db
- dae.testing.acgt_import
- dae.testing.alla_import
- dae.testing.foobar_import
- dae.testing.import_helpers
- dae.testing.setup_helpers
- dae.testing.t4c8_import
- dae.tools.annotate_variants
- dae.tools.create_sqlite_gene_set
- dae.tools.draw_pedigree
- dae.tools.generate_denovo_gene_sets
- dae.tools.gpf_instance_adjustments
- dae.tools.gpf_validation_runner
- dae.tools.grr_cache_repo
- dae.tools.ped2ped
- dae.tools.phase
- dae.tools.pheno2browser
- dae.tools.simple_family2pedigree
- dae.tools.simple_study_import
- dae.tools.vcfinfo_extractor
- dae.utils.dae_utils
- dae.utils.debug_closing
- dae.utils.dict_utils
- dae.utils.filehash
- dae.utils.fixtures
- dae.utils.fs_utils
- dae.utils.helpers
- dae.utils.progress
- dae.utils.regions
- dae.utils.sql_utils
- dae.utils.statistics
- dae.utils.variant_utils
- dae.utils.verbosity_configuration
- dae.variants.attributes
- dae.variants.core
- dae.variants.family_variant
- dae.variants.variant
- dae.variants_loaders.cnv.flexible_cnv_loader
- dae.variants_loaders.cnv.loader
- dae.variants_loaders.dae.loader
- dae.variants_loaders.raw.flexible_variant_loader
- dae.variants_loaders.raw.loader
- dae.variants_loaders.vcf.loader
- django.db.models.fields.related_descriptors
- django.db.models.manager
- django.db.models.query
- django.db.models.query_utils
- functools
- genotype_browser.views
- users_api.forms
- users_api.models
- users_api.serializers
- users_api.validators
- users_api.views