.. _default_configuration:

Default Configuration
=====================

This configuration file contains common, global properties used by all studies
and datasets. Values in the sections of this configuration are used as default
values to the corresponding section in the study and dataset configurations.
Supported sections in this configuration file are:

Example Configuration
---------------------

For example of this configuration you can see
``data-hg19-startup/defaultConfiguration.conf``.

[study]
-------

You can see all possible properties of this section in the study section
configuration :ref:`here <study_section>`.

[dataset]
---------

You can see all possible properties of this section in the dataset section
configuration :ref:`here <dataset_section>`.

[peopleGroup]
-------------

You can see all possible properties of this section in the peopleGroup section
configuration :ref:`here <people_group_section>`.

[genotypeBrowser]
-----------------

You can see all possible properties of this section in the genotypeBrowser
section configuration :ref:`here <genotype_browser_section>`.

[commonReport]
--------------

You can see all possible properties of this section in the commonReport section
configuration :ref:`here <common_report_section>`.

[denovoGeneSets]
----------------

You can see all possible properties of this section in the denovoGeneSets
section configuration :ref:`here <denovo_gene_sets_section>`.

[enrichment]
------------

You can see all possible properties of this section in the enrichment section
configuration :ref:`here <enrichment_section>`.