Gene Properties
===============

Example usage of :class:`Weights <dae.gene.weights.Weights>` class
-------------------------------------------------------------------

You can list all available gene weights names using::

    In [1]: from gene.weights import Weights

    In [2]: names = Weights.list_gene_weights()

    In [3]: names
    Out[3]: ['LGD_rank', 'RVIS_rank', 'pLI_rank', 'pRec_rank']


To create an instance of a gene weights class you can use
:func:`load_gene_weights <dae.gene.weights.Weights.load_gene_weights>`::

    In [4]: w = Weights.load_gene_weights('RVIS_rank')

Alternatively you can create an instance of a
:class:`Weights <dae.gene.weights.Weights>` class::

    In [2]: w = Weights('RVIS_rank')

    In [3]: w.get_genes(wmax=5)
    Out[3]: {'CSMD1', 'LRP1', 'PLEC', 'RYR1', 'UBR4'}


The `get_genes` method returns a set of genes which weight is in the specified
range.

Using `to_dict` method one can get a dictionary with all gene weights::

    In [4]: w.to_dict()
    Out[4]:
    {'UBE2Q1': 5413.0,
     'RNF14': 6682.0,
     'RNF17': 10848.0,
     'RNF10': 3020.5,
     'RNF11': 9644.5,
     ...
     }

Using `to_df` method we can get a data frame represenging all gene weights::

    In [5]: df = w.to_df()
    In [6]: df.head()
    Out[6]:
          gene  RVIS_rank
    0     LRP1        3.0
    1    TRRAP        6.0
    2  ANKRD11       15.0
    3    ZFHX3       19.0
    4    HERC2        8.0



Classes and Functions
---------------------
.. toctree::
   :maxdepth: 3

   modules/dae.gene