DAE Configuration

This is the main configuration file - it lists GPF subsystems in the form of sections and specifies required parameters, such as the location of a configuration file and other filesystem paths.

Note

You can use interpolation values when specifying filepaths.

[studiesDB]

confFile

dir

[datasetsDB]

confFile

dir

[genomesDB]

confFile

dir

[genomicScoresDB]

confFile

dir

scores_hg19_dir

scores_hg38_dir

[annotation]

confFile

dir

[phenoDB]

dir

dir = {phenotype databases directory}

The absolute filepath to the directory containing phenotype databases. The system will traverse this path and load any INI configuration files that contain a phenoDB section.

[geneInfoDB]

confFile

dir

[enrichment]

confFile

[defaultConfiguration]

confFile

confFile = {defaultConfiguration file path}

The absolute filepath to the defaultConfiguration file.