Genomic Scores Configuration
This configuration file hosts the list of all available genomic scores and the properties of their histograms.
Example Configuration
[genomicScores]
scores = mpc,cadd_gs_raw
[genomicScores.mpc]
id = mpc
file = %(wd)s/genomicScores/mpc
desc = MPC - Missense badness, PolyPhen-2, and Constraint
bins = 100
yscale = log
xscale = linear
range = 0,1
[genomicScores.cadd_gs_raw]
id = cadd_gs_raw
file = %(wd)s/genomicScores/cadd_raw_gs
desc = CADD GS raw
bins = 101
yscale = log
xscale = linear
help_file = %(wd)s/genomicScores/cadd_raw_gs.md
[genomicScores.cadd_gs_phred]
id = cadd_gs_phred
file = %(wd)s/genomicScores/cadd_phred_gs
desc = CADD GS phred
bins = 101
yscale = log
xscale = linear
help_file = %(wd)s/genomicScores/cadd_phred_gs.md
[genomicScores]
This is a optional section containing list of selected genomic score.
scores
scores = <genomic score id 1>,<genomic score id 2>,<...>
A comma-separated list of selected genomic scores. If this property is missing then all defined scores in this file are selected.
[genomicScores.<score id>]
id
id = <genomic score identifier>
Identifier of the genomic score. Default value is <score id> from the score section.
file
file = <path to genomic score histogram file>
The absolute path to the score’s histogram file.
desc
desc = <description>
A brief description of the genomic score.
bins
bins = <amount of bins>
The amount of bins in the score’s histogram. The value must be an integer.
yscale
yscale = <linear / log>
The scale for the Y axis of the score’s histogram.
xscale
xscale = <linear / log>
The scale for the X axis of the score’s histogram.
range
range = <<min value>,<max value>>
The range domain of the score - its lowest and largest possible values separated by a comma.
help_file
help_file = <path to help file>
The absolute path to the score’s help file in markdown format.