dae.gpf_instance_plugin package

Submodules

class dae.gpf_instance_plugin.gpf_instance_context_plugin.GPFInstanceGenomicContext(gpf_instance: Any)[source]

Defines GPFInstance genomic context.

get_context_keys() → Set[str][source]: Return set of all keys that could be found in the context.

get_context_object(key: str) → Any | None[source]

Return a genomic context object corresponding to the passed key.

If there is no such object returns None.

get_source() → Tuple[str, ...][source]: Return a tuple of strings that identifies the genomic context.

class dae.gpf_instance_plugin.gpf_instance_context_plugin.GPFInstanceGenomicContextProvider[source]

Defines GPFInstance genomic context provider.

static context_builder() → GenomicContext | None[source]: Build GPF instance genomic context.

dae.gpf_instance_plugin.gpf_instance_context_plugin.init_gpf_instance_genomic_context_plugin() → None[source]

dae.gpf_instance_plugin.gpf_instance_context_plugin.init_test_gpf_instance_genomic_context_plugin(gpf_instance: Any) → None[source]: Init GPF instance genomic context plugin for testing.