GPF: Genotypes and Phenotypes in Families
- GPF User Interface
- GPF Administration
- GPF Getting Started Guide
- Prerequisites
- GPF Installation
- Run GPF web server
- Getting Started with Enrichment Tool
- Getting Started with Preview Columns
- Getting Started with Phenotype Data
- Dataset Statitistics and de Novo Gene Sets
- Getting Started with Annotation Pipeline
- Using Apache Impala as storage
- Example Usage of GPF Python Interface
- Working With Pedigree Files Guide
- Brief outline
- Input pedigree file
- Canonical pedigree file
- Possible input pedigree file structures
- Preparing the pedigree data
- Supported values for sex
- Supported values for status
- Supported values for role
- Common arguments for the pedigree tools
- Transform a pedigree file into canonical GPF form
- Visualize a pedigree file into a PDF file
- Working With VCF Files Guide
- Phenotype Database Tools
- GPF Tools
- Data Appendix
- GPF Getting Started Guide
- GPF Development