GPF: Genotypes and Phenotypes in Families

• GPF User Interface
  • Dataset Tools
    • Dataset Description
    • Genotype Browser
    • Phenotype Browser
    • Enrichment Tool
    • Phenotype Tool
    • Dataset Statistics
  • metaTools
    • MetaQuery
  • Management Tools
    • GPF User Management
• GPF Administration
  • GPF Getting Started Guide
    • Prerequisites [WIP]
    • GPF Installation
    • Run GPF web server
    • Getting Started with Enrichment Tool
    • Getting Started with Preview Columns
    • Getting Started with Phenotype Data
    • Dataset Statitistics and de Novo Gene Sets
    • Getting Started with Annotation Pipeline
    • Using Apache Impala as storage
    • Example Usage of GPF Python Interface
  • System Configuration
    • Common configuration information
    • Common documentation information
  • Pedigree Generation Guide
    • Brief outline
    • Prerequisites
    • Preparing the pedigree data
    • Adding the layout column
    • Adding a status to generated individuals
    • Drawing the pedigree
    • Some notes regarding multigenerational pedigrees
  • Phenotype Database Tools
    • Import a Phenotype Database
    • Generate Pheno Browser Data
    • Measure Classification
  • Data Appendix
    • Gene Weights
    • Genomic Scores
    • Columns
• GPF Development
  • dae Interface
    • configuration package
    • variants package
    • pheno package
    • pheno_tool package
    • enrichment_tool package
    • gene package
    • annotation_pipeline